Resources of Genomics and Microarray Analysis

Genomics and Microarrays:
Stanford Microarray Database:
storing lots of raw and normalized data from microarray experiments

Genomics tutorial at Genome Canada
http://www.genomecanada.ca/xpublic/dnaBasics/index.asp?l=e

Introductions to microarray at NCBI
http://www.ncbi.nlm.nih.gov/About/primer/microarrays.html

Microarray (movie)
http://www.broad.harvard.edu/chembio/lab_schreiber/anims/videos/microarray.html

other resourses for microarray
http://www.learner.org/channel/courses/biology/units/genom/images.html

image analysis for microarray
http://www.maths.usyd.edu.au/u/jeany/ (publication)
http://www.stat.berkeley.edu/users/terry/zarray/Talks/image/jpegindex.html http://cmm.ensmp.fr/~angulo/research/dnamicro.htm

Bioconductor
The richest source of freely available packages for genomic data analysis

Nature article
the perspective of biologists facing heaps of noisy genomic data including their urgent need for better methods and computationally and statistically skilled support.

dChip Software
http://biosun1.harvard.edu/complab/dchip/
dChip Software: Analysis and visualization of gene expression and SNP microarrays

Biology:

Retroviruses
http://www.whfreeman.com/kuby/content/anm/kb03an01.htm (FLASH)

human genome project(movies)
http://www.genome.gov/Pages/EducationKit/download.html

the central dogma of molecular biology (wonderful movie):
http://www.genome.gov/Pages/EducationKit/video/qt/3D.mov

EBM & Clinical Research Workstation menu
http://www.shdem.com/ebm/default.asp

Biochemistry & Epidemiology useful link:
http://www.med-ed.virginia.edu/menu/otherMedEd.cfm
　
Statistics:

online textbook for statistics
http://www.stat.berkeley.edu/~stark/SticiGui/Text/toc.htm

Terry Speed's Microarray homepage
statistical challenges related to microarray data
new webpage: http://www.stat.berkeley.edu/~terry/Group/home.html

Statistics
http://www.bettycjung.net/statsiteS.htm

Computing technology

Introduction to R for biologists (by Natalie Roberts, WEHI, Melbourne)
R manuals under link "Manuals" (left column)
manuals: http://cran.r-project.org/manuals.html
R tutorial: http://www.personality-project.org/r/
R package: Statistics for Microarray Analysis